Scaffold Ga0209757_10004764

Overview

Basic Information

• Taxon OID: 3300025873
• Scaffold ID: Ga0209757_10004764
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3444
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000423	Metagenome / Metatranscriptome	1156	Y
F049041	Metagenome / Metatranscriptome	147	Y
F094387	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209757_100047641	F094387	N/A	MTEEIYYKKKKIKLPFKDADYSDPFEMETVSNPFSGQSIAMPKFAVAVYDVTMGSNLIAESYDQKH
Ga0209757_100047645	F000423	GAGG	MSTLSSSIFYIKYYAKKHGMIIERKATLDDECFEGVHKKFGYPYKKYVDINATEEINNGKPQYRTASVKWEINEQPTLI
Ga0209757_100047647	F049041	N/A	MNKKDEQQQDEIVKNIYRVLNKLEQRIFTLEKVIGKLQLRLGDVVLYIDKKAEQSK