Scaffold Ga0209757_10001962

Overview

Basic Information

• Taxon OID: 3300025873
• Scaffold ID: Ga0209757_10001962
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5038
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (35.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000319	Metagenome / Metatranscriptome	1307	Y
F000423	Metagenome / Metatranscriptome	1156	Y
F012881	Metagenome / Metatranscriptome	276	Y
F041444	Metagenome	160	Y
F044727	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209757_100019621	F000423	N/A	MFNLNKGESKMKTDTAIFYIKYYAKKHDCIIERKATLDDECYEGVHKKFGYPYKKYIDVNATEEIDNGQPQYRTASKKWEINNQPTLTE
Ga0209757_100019622	F041444	N/A	MKSKEIEIVKLSNYNLYKIVDKLEQRIATLEKVIGKLQLRLGDVVLYIDKKGEENELERSNN
Ga0209757_100019623	F000319	N/A	MFKDLLLIISGATLCCAFYFWQDYKRNKEIKKQERLNEIKRN
Ga0209757_100019624	F012881	AGGA	MFGTNKNALLTTNLIVKVRKYKNEQPYFSLYSMPAIADETKARTSVEKLNDLAELEKEENWQTEYYSVPMTL
Ga0209757_100019629	F044727	GGAG	MELEYKIIYQIGGDIPINPAWIGEQLNLSLQALQKQIDKKNLHGEHKLVIKLPDGWALPIKNQGSSD