Scaffold Ga0209757_10000884

Overview

Basic Information

• Taxon OID: 3300025873
• Scaffold ID: Ga0209757_10000884
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7153
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000704	Metagenome	928	Y
F001606	Metagenome	664	N
F001712	Metagenome / Metatranscriptome	648	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209757_1000088410	F001606	GAGG	MTYGFDDVTFTSIGTGVAETQLNSGTSLSAPDPAHAFNAVVPYQMELGAFTTNQSLLTAFRIQSDDVAVEPKKFVLPNINTGDAAFTSVAVPALLAYPINTPLAGGEHLNFYAQALVANTVAPGVGATVLYDTVSANGVEQYYTRPTNENASSTTINTRTQGGDMTIQGGNEITGLYTVVSGATATASEHDVGYSEFISPDFETSMPYRIAVQPTATGLGAAANAVTGGGGLMQYNMPRGKGIPLANNVTITNYYTNRDARAGGASNFINFVRYSKN
Ga0209757_1000088411	F001712	AGG	MHASAGQPIATKAQAVISSLAGRITGYNPFPNSTGGAVPQTISIDGIFNRISGIGLGSFIYGLLPLKQLPHKGKAKTLGKSLLTAGVLSGLFMSGNPHNTNLLTTSRPAITVSSSEVSYT
Ga0209757_100008849	F000704	AGGTGG	MPHENGEILPSNVKSLAVYDVGSYGEDLFLPLTDVGLTETALTFSTATVTRDTSDSNQPIDTYPRVFSDTDSGLLLNEGNDTAYNQTYTLDPDMTAIIYKISLNFCAVLTCSAYTNGGLNIGGLHIKITERSTNDRLLYENTFQSGAATLAATGTSMHWFTQDIVETIKINKGNPVDIQLNLVTVVTGTNTRQEGYAPVAPLLKTAVMKRFYESGMSLHLHPDLSHADGVFKYSKQRVSNLGQ