Scaffold Ga0209757_10000805

Overview

Basic Information

• Taxon OID: 3300025873
• Scaffold ID: Ga0209757_10000805
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7481
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F084101	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209757_100008058	F084101	GGA	MSWQNTSLLMLRTMLNDAGVSETRYSTQRLEELLITSAYFLPLEINFSTTYTINVASYTISPDPGVSSPPVDGDEFISFMVLKASCLADEGNFRSAALLQGVNARIGPAHLNTSTYGTHLATLLNQGPCKAFEELKEQYNFSYEGKKIIRAVMSPFASNKFDPRSMLGSMGEADTENVHRNRGY