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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025873 Open in IMG/M |
| Scaffold ID | Ga0209757_10000611 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8477 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (73.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 18.92 | Long. (o) | -104.89 | Alt. (m) | Depth (m) | 1000 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001594 | Metagenome / Metatranscriptome | 666 | Y |
| F005148 | Metagenome / Metatranscriptome | 410 | Y |
| F007267 | Metagenome / Metatranscriptome | 354 | Y |
| F008755 | Metagenome / Metatranscriptome | 328 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209757_1000061111 | F007267 | GGA | MRLKIFTCPECKFRKFESINALNVHIGKSHVVDYKISIINNKPAFKKKTRASVQYIKKSR |
| Ga0209757_100006115 | F005148 | GGA | MKYKNWEDNLKKTLPIMEEVECKKCGLKFFDEWNLLSLATLDMCMLCANRNLDKETIERAYDVK |
| Ga0209757_100006117 | F008755 | GGAG | MNKSRVARDLYRKVFNDDLIDLKDSDARKQIVREFLNDPVNKKAGWKSKDARFFRLAFQKVAKENNFNVMNIGVTPTPSRSKTNKGSMNINVKSKQKNPPPMGEAIKPPTEGEKKFGALPQTPQLEAQQAQAVFYSAQSVGQMCETFFNIAFTRMNVEPITQNERIALGEAYAPLCNKYLTGHSDLIMPLIITLPIILSRLAQMAKLKKEKEIKERYGMDEVPKDQPKKKSAWENMSHGKNETNKG |
| Ga0209757_100006118 | F001594 | GGAG | MEKTKLTKDEYLDSLDPDNLNLEKKDLINFCHSCINEWKSNRIGNFKFIVSMELILAGIRVTPEDVLKAVWKKILVWFWDLQYKNALADHEGMLRKMRELGSG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |