Scaffold Ga0209757_10000063

Overview

Basic Information

• Taxon OID: 3300025873
• Scaffold ID: Ga0209757_10000063
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33960
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (19.61%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F094420	Metagenome / Metatranscriptome	106	Y
F096047	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209757_1000006331	F094420	GAG	MDEVLDGKPLEAEMWKLNYIESLLHYTAIPTSEQQRIMSSLDEITDIEADEILKKIKENEIHLDPKHQYEAMRKNGMFNPKDY
Ga0209757_1000006345	F096047	GGA	MPNPIYRVIVEFGYKKKNSVRHYKYEKIDTFVLTNDIEMIKKDNSLMKKILRKAKSGNKELDITFKNIYIEGQYGETAY