Scaffold Ga0209666_1064164

Overview

Basic Information

• Taxon OID: 3300025870
• Scaffold ID: Ga0209666_1064164
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1913
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025038	Metagenome / Metatranscriptome	203	N
F048992	Metagenome	147	N
F054022	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209666_10641643	F025038	AGGTGG	MMVGIIGTVAKFVGVNMPEVNKNNRRLFVEDEYDLYDVRKARPFWNDVCEVNGWDIVKDEEDFKEDYVCKINNELYFMELQVVGYWHNFDLSKISNVRISASKVRLLREKENGGLIFLNCVPNRFFAINVNQVTEDMKKDSVREQFYEIPLRIINPREVNVLDTNYCDCLENHLAITKRYDGRMAFAQKDYNIRGANGICC
Ga0209666_10641644	F048992	AGGGGG	MEYAADDINYGYMSIIMHINSEYTLVDKLENIREIDGTIEHPVFGKNKGGVSFSLFLRGFYTVFEAVLNYGDRFDVYVVNESGNTTMIDEDLDHLISLLHILYVNKKAEEDDLLNRALNPHTYRKAAKKMFYNEDPPF
Ga0209666_10641645	F054022	N/A	MKIPHFKKGLKVQFVEAATDFIDPPTQDILWRYGKILFKVKSEHGAISYFIEENKKKVKISRYLIFPVN