Scaffold Ga0209666_1057666

Overview

Basic Information

• Taxon OID: 3300025870
• Scaffold ID: Ga0209666_1057666
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2053
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000713	Metagenome / Metatranscriptome	925	Y
F030440	Metagenome / Metatranscriptome	185	N
F058965	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209666_10576662	F030440	AGG	MEFAIYMLIGCNLLAFGGFAYTRGRLGKLERALGDLDWEGLAGLIGDVAVLKRTIQKLNMRLNGMETADPMAALAKLPQLQQNVTPMAAVKKRGG
Ga0209666_10576663	F058965	AGG	MAFLGDFGKIFLGGASTGQVVGALTGNPAVAVGAQRAADLASKVSRSSGTQQGQSVAVSQATQTRPAETQSSGAGVGTGEFLGYSDMGGGGFEGVYSGATPRMQAQPAGLPAIVSGGVGISRGLYGMLFGGAVGAAPMIIDQFTGQPKTLRVTRKLQRDVKQAVMLLGPEAVANQLGVGLDVVIYIMQKKIRNDGPYVTKAAVRKTRQTVRKMKTMCDLYDDLRPAAKRRAPMKRATTTRITNVK
Ga0209666_10576664	F000713	AGGA	MPLVKKNITLAAGATSDQILQGTTYEYVDPGTRLVVAAAEATGTYSGNVAMNFTVNNAEFSRDVAISEKVTGEAFGWNNTGYVLNDMVTTGQVRNRPVVTFTNNDASSVDIEVAIFIGG