Scaffold Ga0209666_1041692

Overview

Basic Information

• Taxon OID: 3300025870
• Scaffold ID: Ga0209666_1041692
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2532
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048362	Metagenome / Metatranscriptome	148	N
F056671	Metagenome / Metatranscriptome	137	Y
F076607	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209666_10416923	F048362	AGGA	MLIKLQNWLMNVAAKWIWIAIMFPIRIILGCIFAVSKHMPTKVELPYKVVKNEQRKENWY
Ga0209666_10416924	F056671	GGA	MRIMMTITGLILGMLGMITAIHSDHQVLGILISFAGVMTMLTGLPDNQKDR
Ga0209666_10416925	F076607	AGGA	MTRYKQHIIDELAKLQFDYAECKIEMAEFISGITRLGVDSPGDIEEHRSNAEEARYYYKVSKHEDKF