Scaffold Ga0209666_1022201

Overview

Basic Information

• Taxon OID: 3300025870
• Scaffold ID: Ga0209666_1022201
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3763
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001942	Metagenome / Metatranscriptome	613	Y
F008281	Metagenome	336	Y
F034894	Metagenome	173	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209666_102220111	F034894	AGGA	MNVTFNLMGGGELNIPARAISGFYKDEFTSEVIIEVNGDEYKVRDSLNEVRYILGLAR
Ga0209666_10222017	F001942	N/A	MPRKTSDQHQNNSRLGALGESLVQTFLLEYADFCYPTQEKHPADLLTEFGRSKYTVQVKSRRATKEKKFVFAAENSRSQSETYKNYHCDILAFVFFDDEQKRIMFKPNTSSQNYYTFDKKAITETMELDSLQETLATLSSVPVLNPII
Ga0209666_10222019	F008281	AGGAG	MNLMCNTKHGAIQWRWKDSGQPSPEYKSLNHQWWIPKKSEFELVTKVDASIKQEIKDEIWEDMQSDFEYQKGIYKLHKLNKKGEQK