Scaffold Ga0209666

Basic Information
Taxon OID	3300025870 Open in IMG/M
Scaffold ID	Ga0209666_1001239 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025870 Open in IMG/M

Scaffold ID

Ga0209666_1001239 Open in IMG/M

Source Dataset Name

Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19584
Total Scaffold Genes	52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (23.08%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

19584

Total Scaffold Genes

52 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (23.08%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Saanich Inlet, British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Saanich Inlet, British Columbia, Canada

Coordinates

Lat. (^o)

48.6

Long. (^o)

-123.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001222	Metagenome / Metatranscriptome	743	Y
F002321	Metagenome / Metatranscriptome	571	Y
F016807	Metagenome / Metatranscriptome	244	Y
F041866	Metagenome / Metatranscriptome	159	Y
F099888	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209666_100123917	F002321	N/A	MVLDLNREMAWVTFLHDGWETKWHPVTDASGKQLEWGLDGVGIMNHCRAQFNNSDNWVSFGIAQTSQMMVKNSVRDNL
Ga0209666_10012392	F041866	N/A	MILYQVHHMWYETAMIQECWDSVLAALKASPNTDVKIEICLNKQTYVEKPNEGSKVDDFFSKHLDHSLFKDPRTSITIKTDKDPFYNIADWRREVYDAKAKYTVWGETDTILPRDFFGILDLVQIDQPHVLTFAGRPMWDNSWDVVTHERLQGYSKPCQCEDHKEDCIELLEAPFKYKDYITQAELDKFNDESGDVKIEQVPWKIDGSTVCISGGFETPFIAPGMHFVREDTCFEYYIRKKKIPQVCVTSRLKGHNYKHPSKRTGTIATRNDEVFKQYASESMHAMNSFIYNLKV
Ga0209666_100123927	F016807	N/A	MNMQNFEKENKGLFIALASILNTKGVNIQMESDFDYWKEHREIKYTNVPYIGSGSYNGKDGFYFKANRDFFGIKLEEIRDSFPYNIDGYRIECVSISEYESDDDRSWSESVGFVIEKITTKVVA
Ga0209666_100123940	F099888	GAG	MSKKYIIPKTNVGKGGFFHIGGKRYHGPSWTEVEEDTTFDDLEFEPEPFSELFKEKEEKQWKFTSARSGEEYIVRYNIKNELSCSCWGYIAHRKCKHIREVSSEIVA
Ga0209666_10012396	F001222	N/A	MNKLKQAIKSILNESAKINFAGHTFVLKIDTNEDPQKKGVKIQFLPTKFGNITSTEQNDIAIELEKRLESGLSTYELRVERDRNLKDKTIIGFFIYIEYFDKIIRKALSKQNPRAEV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209666_1001239

Overview

Ecosystem & Geography

Associated Families

Sequences