NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209308_10243513

Scaffold Ga0209308_10243513


Overview

Basic Information
Taxon OID3300025869 Open in IMG/M
Scaffold IDGa0209308_10243513 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120405 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)775
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005351Metagenome / Metatranscriptome403Y
F016813Metagenome / Metatranscriptome244Y

Sequences

Protein IDFamilyRBSSequence
Ga0209308_102435131F016813N/AMINLTKLPILNNNHEYLEDNSDYSELYERRALSSFKEILRNDRLNYNTEDYLIVYSYSTDFLEVITELISFNIEFSHKACHLSDESYLLIDKTQTL
Ga0209308_102435133F005351N/AMYNPNSPSNWSWSKAFKEMEKTVNRAELEQQIINHLHGYKVEGKFLELSKSQQDDHYEILTQIL

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