Scaffold Ga0209308_10060415

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209308_10060415

Scaffold Ga0209308_10060415

Overview

Basic Information
Taxon OID	3300025869 Open in IMG/M
Scaffold ID	Ga0209308_10060415 Open in IMG/M
Source Dataset Name	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1964
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Germany:Helgoland, sampling site Kabeltonne, North Sea
Coordinates	Lat. (^o)	54.1883	Long. (^o)	7.9	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013576	Metagenome	270	Y
F020447	Metagenome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209308_100604153	F020447	AGGA	MVKQIMIVSIMITFILFLGYLGIEYLISQLINDVFAQIERK
Ga0209308_100604156	F013576	AGTAGG	MFDDIKKEIDDTLDHLNPFENICSDGYSGNNILPSHVKKFIADKKATQKEQELVDNYIDEIKLKQGEK

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