Scaffold Ga0209308_10035854

Overview

Basic Information

• Taxon OID: 3300025869
• Scaffold ID: Ga0209308_10035854
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2768
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007645	Metagenome / Metatranscriptome	347	Y
F018089	Metagenome	237	Y
F030892	Metagenome	184	N
F031659	Metagenome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209308_100358541	F018089	AGGA	MTNTTQQTSFETTTPEAKASYGMVRKIASQFSKAKNCPKDIKWGTIHGHFVSRLNDKAKPLTQGQVVKICSMKALPSADLKAMRAYKKLVELG
Ga0209308_100358542	F030892	AGG	MENLVNAISETRMERLLNPKMSDHFHTNFVGKYGYRGYDIKVGRKWVTMRSNVHKVKMSIQKFKVHAFLQWRRDAMTDASCKAYNETGKYSRPRAWWKDYGFTSNPKDFNYEPSRLSW
Ga0209308_100358544	F031659	GGAGG	MKKKCENPNGLQNMATIVDSETRKPVRFNSLEKAKLHLKSKGYRFRQAFNMKEDRSMIYQGRFGWVKLSSSKDYLNKTSMEQGTVWNIIQM
Ga0209308_100358546	F007645	GGAG	MAKIVYGKRDTKTVVSIDKAPQSIQTLWNQANSLGVNIVRVRANKERYETTTGDTFEGYHSGRVSVYNQKSKPSRPLHFVRRTPLGKDNKGMQILEVATNIDVQDTLNVINDYEYYPTNSFF