Scaffold Ga0209308_10007941

Overview

Basic Information

• Taxon OID: 3300025869
• Scaffold ID: Ga0209308_10007941
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7656
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044458	Metagenome / Metatranscriptome	154	N
F054888	Metagenome / Metatranscriptome	139	N
F069473	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209308_100079411	F044458	N/A	MKKQEKKTYSSVTLKMLEEYQAEKKEFHTTWGDKHRIDRLVSVDLRVKFMKAEQLFKKSVAEKNDIQTQKMIQMMRRAYVVLMDELMSLGYKPLEPHIRCFDWDGQIWYVTDLDYEIPRAMQMYKSEGKANFISIQELLRCVPKELMDMRLELAMMFEGSKFVRIEKK
Ga0209308_100079413	F054888	AGGAG	MDFFEENSGEGNGSNSYLKFLAKEKAWYIGENVYDMEYILLDPDTIQTGLGRYSGGYEFEFSDIPFSKVENKEGWKKAFSVWAYTSDKQVVQWERAAWGELQGFKSMCEKFWMQKAANEGQLPCFRYLGSRGVKFDSGFSSEVPEFEFVAWKPRPAEFIIPAWANDEDEADNKKEAESPVTKTVVTDEDIPF
Ga0209308_100079417	F069473	N/A	MESLDMKTGIKNKRNKLTERTTTQAIWVDSEIHQLLKEHQVMSRSSRSLGELAAHYIKLGICDARSQEK