Basic Information | |
---|---|
Taxon OID | 3300025867 Open in IMG/M |
Scaffold ID | Ga0209098_1030525 Open in IMG/M |
Source Dataset Name | Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW1_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2960 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Japan | |||||||
Coordinates | Lat. (o) | 35.92 | Long. (o) | 139.63 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F021528 | Metagenome / Metatranscriptome | 218 | N |
F051104 | Metagenome / Metatranscriptome | 144 | Y |
F069750 | Metagenome / Metatranscriptome | 123 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209098_10305253 | F069750 | GGAG | MILSGEFPLQENSFFVEGAKFLIRERKKARGKKPQYYLVKLEPFQYVSSLFPTGEGESYTFDFEQKLYRLEKREHSVTLRFV |
Ga0209098_10305257 | F021528 | GGAG | MIDTLKVMLNDYRISSDSEIRVQPASYELGTGTKVEYPLFETPEQRFYGAKAYLNEDNWNLTLKPLAGGRAVGAFLQLSIPKNYYGNNFYSVGEQGTEAVLSKVEGELKERGVHTNLQEADISRVDTFKNIEPEEPFSSYYSLLSLLKARRAIQRGYGTTFLLSNTQQEFCVYDKLAEMRERQLETGNLPPTMRFEHRLLNKQKVQNVYGLSKVEDIFRGGYQVIREKQVESWKNSLFNFTAEEVVLLGSRQLEQEMRVFKEKFPSNWFSKFLKAYGAYYLASYAGKEVVIEALQAFEADRMKLWRAVQVFEEAEKELLVLKQEEGSSKTLGVLYEELRRKVCLN |
Ga0209098_10305258 | F051104 | AGG | MLAKAIEEEAKLSQELIKEGFSHAFKAGELIQEVKNMLNSEEALWKWLEGNCSEVEKSALNNYLKLFNGETIKVEATAK |
⦗Top⦘ |