Scaffold Ga0209098_1030525

Overview

Basic Information

• Taxon OID: 3300025867
• Scaffold ID: Ga0209098_1030525
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW1_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2960
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 35.92
  • Long. (^o): 139.63

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021528	Metagenome / Metatranscriptome	218	N
F051104	Metagenome / Metatranscriptome	144	Y
F069750	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209098_10305253	F069750	GGAG	MILSGEFPLQENSFFVEGAKFLIRERKKARGKKPQYYLVKLEPFQYVSSLFPTGEGESYTFDFEQKLYRLEKREHSVTLRFV
Ga0209098_10305257	F021528	GGAG	MIDTLKVMLNDYRISSDSEIRVQPASYELGTGTKVEYPLFETPEQRFYGAKAYLNEDNWNLTLKPLAGGRAVGAFLQLSIPKNYYGNNFYSVGEQGTEAVLSKVEGELKERGVHTNLQEADISRVDTFKNIEPEEPFSSYYSLLSLLKARRAIQRGYGTTFLLSNTQQEFCVYDKLAEMRERQLETGNLPPTMRFEHRLLNKQKVQNVYGLSKVEDIFRGGYQVIREKQVESWKNSLFNFTAEEVVLLGSRQLEQEMRVFKEKFPSNWFSKFLKAYGAYYLASYAGKEVVIEALQAFEADRMKLWRAVQVFEEAEKELLVLKQEEGSSKTLGVLYEELRRKVCLN
Ga0209098_10305258	F051104	AGG	MLAKAIEEEAKLSQELIKEGFSHAFKAGELIQEVKNMLNSEEALWKWLEGNCSEVEKSALNNYLKLFNGETIKVEATAK