Scaffold Ga0208822_1148168

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208822_1148168

Scaffold Ga0208822_1148168

Overview

Basic Information
Taxon OID	3300025866 Open in IMG/M
Scaffold ID	Ga0208822_1148168 Open in IMG/M
Source Dataset Name	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_STIC08_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	872
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	USA
Coordinates	Lat. (^o)	41.84	Long. (^o)	-87.68	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012026	Metagenome / Metatranscriptome	284	Y
F080087	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208822_11481681	F080087	N/A	YSGNRTKNGAMRMQATATVTSASEMEHATAWKTSETEYDVRVPARYREYTCAYRVVAIYRRYGMITDYQYRVSKKELEEIERIVETRIEQTNNKGGHK
Ga0208822_11481682	F012026	AGGAGG	MNLRELQATIANIIGQRAEAIDRLNRLTTIDDRFNPENITAINSYKQAIATLSEELTRHEHERAELLAREEAARKEYIAALNAYDEIYGRFPNAEKEAAELLKRYAKITDAAEKARSIVLEKMNALTAVAGGFLPIPPAPSHAWSTFAKEYAFEIEHRGGD

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