Scaffold Ga0209483_1069461

Overview

Basic Information

• Taxon OID: 3300025862
• Scaffold ID: Ga0209483_1069461
• Source Dataset Name: Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1605
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location

• Location Name: USA: Barrow Environmental Observatory site, Alaska
• Coordinates
  • Lat. (^o): 71.299
  • Long. (^o): -156.61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005296	Metagenome	405	Y
F009261	Metagenome	320	Y
F016145	Metagenome / Metatranscriptome	249	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209483_10694612	F016145	GGAGG	MRQTASRIRSLARRYSLAEAAAFPGIGTSRVSFPINRKPAAEFRHSHLRFAHQV
Ga0209483_10694615	F009261	AGGAG	MIITPSNSGNLVAGAGIGIFAWGAFLKADKIPFLKKLLTTKRKETTLTWINGNKGISLLGLEAINFGIHGILSPNAVIFALGNTILNIFMLWVYLPFRMGCAGKQHIKTVLKGVTV
Ga0209483_10694616	F005296	N/A	PFLWLLPSYEAGFYSAVIAGKIRNRGKVRELLVHGKRPRTTLPLIDERLRKAAGTPTRAQAFAVRHLVALVRWLANSRAIEYAILIGLKRSWPMGQAIHPKVRFCL