Scaffold Ga0209483_1000013

Overview

Basic Information

• Taxon OID: 3300025862
• Scaffold ID: Ga0209483_1000013
• Source Dataset Name: Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 217700
• Total Scaffold Genes: 208
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 155 (74.52%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location

• Location Name: USA: Barrow Environmental Observatory site, Alaska
• Coordinates
  • Lat. (^o): 71.299
  • Long. (^o): -156.61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027880	Metagenome / Metatranscriptome	193	Y
F030190	Metagenome / Metatranscriptome	186	Y
F043650	Metagenome / Metatranscriptome	156	N
F094027	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209483_1000013135	F043650	GGAG	VNRNVEYMLLGLGAAWLIMFTYVVLITLRERKLRKELDRVRRMVENPDR
Ga0209483_100001316	F027880	AGGAG	MVEKGAGGRGTGIDRGLRSARIARLPMEWMDPMSWRLPSGKDLAEFALQSGFLAPMMLERPNLKRRKAPVPAPASPVVVERQAGEVPEHSGSFRGIR
Ga0209483_10000136	F030190	AGG	MYFNASPTNMTELLVVCVAVVSIVMLLKKRYESNLPLLFYSLAVLFTNGADRPVQPAILYGGLVFCLLLRFEFMGSGFSKFVAFLANAGLVLMIWVMMSHVLA
Ga0209483_100001383	F094027	N/A	MRSTTPVVSGKWVAIVITVAIVISVTVACVWLYRDYLSAPRLP