Scaffold Ga0209099

Basic Information
Taxon OID	3300025858 Open in IMG/M
Scaffold ID	Ga0209099_1025108 Open in IMG/M
Source Dataset Name	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW2_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209099_1025108 Open in IMG/M

Source Dataset Name

Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW2_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3287
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

3287

Total Scaffold Genes

3 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Ecosystem

Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	Japan
Coordinates	Lat. (^o)	35.92	Long. (^o)	139.63	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Japan

Coordinates

Lat. (^o)

35.92

Long. (^o)

139.63

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F040985	Metagenome	160	Y
F041560	Metagenome	159	Y
F076791	Metagenome	117	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209099_10251081	F040985	N/A	MIDITESPSLISFAGNPVIFEACSSDYLVSLGTRAVFEMVVSGIDTNIGHSFTLRFAGKTLVFKSAGITEFDGLLFEVAYYSQTFNDFASNIYQCFLENYDIQKSYDVTLGPPGSGNRKITLTAKNPGDENSVTLTNVGVYGVAQGTNTPGTDDEYRDFFGILCLIRDGFGTTIGEDIKPSDLMGVARFDVSDYLRSKFAAWELNRFEFPELTGNVRVHGWDYLLKYKASFAESVAGHVKGLLSTRWNYVLAGGLNRELLASLNERYLDYFSIEANKFRFLTWLPQTKYSRSGVTEKLFFLFQDNPTGVQYRLVVIVNLTDGSHKLINATPMVAFPSFSVAEFKVGFDHLNLVNTWYGRTVKSWEVVLMDSDDEYLSERRIFINDTRVFDNEKVFFYRNSFSAYDTFRFLGKSETNLEYERISGSTIREEKESFFNAPDRQFSSRETESCKANSGWISLTEKQC
Ga0209099_10251082	F041560	N/A	MLSLLIADQPLDLSEDFSVSLNLKSPLFNDVGDYSFPFKVPSTVRNMAILGWKNRIAASRSIYEMYEGCFRWNGIVLFKGQVRIKTAGEKSFEGILYINKGNFNYEVKDLMLNRVDLGLKEFASEQDAINYFNWSLTHFYPEVDFCLPKIGNLDYYDPPATNPELMAYNYVFPDGWLHKTTSDGTQRTILVPFLYLKYVLNKLAENFGYRLEDEFFTSCTELTRLVIYHSVNLSEVLFGLQQLYYCRLVPKIKVSEFISGLEKWFNCSFHADSKQRVIRIVGNKDVLLKSELVEFSENILSISQDIPDEITGYRFMIGPDAGDKVYQSQLDAEKGITDYIRGAVGTFSEIPPYPFTWIGDIYYVVDTNTWWQLGVNGITFLIEWMQMPNGPVLTDKFFYKYGDEKNKFETSFSSLYDRFGVVSCGNLGTDKDKITPRLFWVGMTGGWGTPVELRGIADGSNFSLRYTGSNGIFNLFWKDWVDWIMKTRKTVKIEKQMDFIALKDIDFTKRYRMNGINYLISEISVTLNKSSIKSAQLKCFACP
Ga0209099_10251083	F076791	N/A	ARVPQRAVGKYMEAPAATSQTVAPVVDPEFTASINRLNSLIEQGIPAFISFEHLRETTNKVNQIEAEVSK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209099_1025108

Overview

Ecosystem & Geography

Associated Families

Sequences