Scaffold Ga0209099_1000189

Overview

Basic Information

• Taxon OID: 3300025858
• Scaffold ID: Ga0209099_1000189
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW2_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 70328
• Total Scaffold Genes: 114
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 79 (69.30%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 35.92
  • Long. (^o): 139.63

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055453	Metagenome	138	Y
F071209	Metagenome / Metatranscriptome	122	Y
F097281	Metagenome / Metatranscriptome	104	Y
F102589	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209099_1000189106	F071209	GGAG	MSDNNTYVPMNELIREKEKSWTFTHINLPYAEIAKKGIVIWCVENLEGRWTMLGGNKFGFEDGTDATMFRMQFGLGI
Ga0209099_1000189111	F055453	N/A	MKLKDIINESATDVVARFYKEASQEADKFYNPEDVKYKNLNKEYYEEHFKQWFSEEVVPVFTKPVTKPQPEFTNAPKEGKLQSPGYRGLNYALAAAGLPYNHKVQRYEPNATRMIASQTMDGARNNNGQ
Ga0209099_100018928	F102589	AGG	MVVINIAMSPLKKAIFTEVREHHEKAASFDDEQLNKLMFHHPDGLRLSYSGFVILKNIFTVYSFAIPETIKSRHQYGMSKMEYPYFFTKRRLILFSEMDSMVIKLHGGIEGFLETCSQLD
Ga0209099_100018998	F097281	N/A	MNKATTPPVNLKEQNAAHTFRVTIRDRDHFYKLVNWLNTNVGKGEDKWTMEGRVLKTLKQGKTVAPKIYIFKEDFDPSSSLYLSLL