Scaffold Ga0209603_1260095

Overview

Basic Information

• Taxon OID: 3300025849
• Scaffold ID: Ga0209603_1260095
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 626
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027055	Metagenome	196	Y
F063586	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209603_12600951	F027055	GAG	MNTYQKIILAAALTCAFAWVSSDELDHDIKQAEQYRHDVCTGSLPDFKNIKPNCEE
Ga0209603_12600953	F063586	AGGAG	MKKLLTLIEFKILCDAHDWYYQRTEDPHVYDRGDRNRKYLESIMREGGEEYKRIYFSYES