Scaffold Ga0209603_1111014

Overview

Basic Information

• Taxon OID: 3300025849
• Scaffold ID: Ga0209603_1111014
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1196
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050674	Metagenome	145	N
F063088	Metagenome	130	N
F087764	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209603_11110142	F050674	N/A	MRRKQVMDRIVNPLNAVGYSDWGIKRTIREAENVSRWNPWKCHEWMEEARDRMDLDNLFHEEYDSAVRRINAHWRMLPRFRHHNPDEFWKRDKVSYPPMYLELMVDDSDW
Ga0209603_11110143	F087764	AGGA	MKRPTLTEAKTFFYQNAPFVMDEYEDMKQDYGEFFAARYIIEILIDYRKNEKEASNG
Ga0209603_11110144	F063088	N/A	MYLTEKDLKFEIRQINATINELATDQGGDITYLHQEIVELKQQIQMLTEQVELLKDKINE