NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209603_1025666

Scaffold Ga0209603_1025666


Overview

Basic Information
Taxon OID3300025849 Open in IMG/M
Scaffold IDGa0209603_1025666 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3572
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009527Metagenome / Metatranscriptome316Y
F054789Metagenome / Metatranscriptome139N
F090175Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209603_10256665F054789AGAAGGMNREQQRKFDRIAASRLSRIKGGIPRHIALSNSRSITLRNKLNRLGLEGPHIEAALSMVDEMGLQEVMSKQPLGSRFASMPQAKKKPKVWRS
Ga0209603_10256666F009527GGAGGMKRDMFPPSIVNLLLQEGQRFTVEGQKREALGTGIIPVIASARGGKTSLAYAFIDYVIKYTKRPVILDSFPQKVIDEGIPDHWIDRVSNTSFNDIAEVDEPAVWLLDDSATHFNSRSAMSSTNQTLAKAAGVLSHFGGGMTVIFTTQSLSGIDLSLLRYTTISPVVRWVDKDLIAQERKEWRGEVEHGQYELRRVCKDSRLRDFFWSSKDSCLVKAPYPEFLKKENDPIKADLLSRPMRYHSIEDKKIMLGIIKPPAKQRAKRKKVVIDE
Ga0209603_10256667F090175GAGGLSDEESSNITTLPPNRGRTWADVFIGATYVTGGLLFLGLMATGLYFVVGKVPMWFFIAIGTSLIFIPFMIERAKDDAELVIVSDGPHRLTEYRIGNKVDLEIEGNAVRFQSKSGVNRYLLSSIDVDSKTAVGSEFAGYSQIDQVRDLTTLQRMVEMLQSTLKESRVSAQTVGVEVEKQSIEIVDWALKTIYGAIIPTEISEAFGVDDENMALEPNETLEELAEDFE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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