Scaffold Ga0209603_1003577

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209603_1003577

Scaffold Ga0209603_1003577

Overview

Basic Information
Taxon OID	3300025849 Open in IMG/M
Scaffold ID	Ga0209603_1003577 Open in IMG/M
Source Dataset Name	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	13377
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (87.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Germany:Helgoland, sampling site Kabeltonne, North Sea
Coordinates	Lat. (^o)	54.1883	Long. (^o)	7.9	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F037256	Metagenome	168	Y
F104980	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209603_100357721	F104980	AGGAGG	MTFVDKFDDDHFIWQDHIQGIDKPVLWQYKNKEKCFYQWPLYKRSDYKILIELTKDQKKIALDYLEELHKPLNEETRQHNNEKARLRRANR
Ga0209603_100357726	F037256	AGGGGG	MSKPKEYIFSNTFTVTEETEVLANSYDEAVEIFLSGGGTTDEVDQSGGNWECIQEPTEEEEGK

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