Scaffold Ga0209603_1001005

Overview

Basic Information

• Taxon OID: 3300025849
• Scaffold ID: Ga0209603_1001005
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30799
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (84.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027807	Metagenome / Metatranscriptome	193	Y
F048234	Metagenome	148	N
F093796	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209603_10010051	F093796	N/A	EAYTSEPEYESEMEAYKAGDLTLCDMNEGSMEVWEED
Ga0209603_100100547	F027807	GAGG	MSIKFVEPKPIKAELIQELDGLVGQLHNLSIRKPMAFHVQEAVMEARMADFLELSEQDFIRGWTDWEEGIQHKEGQSEAYNAGYADCYEYENRGGQ
Ga0209603_100100548	F048234	GGAG	MQIAIQISKQVDDWDKFVEELEAIEVTARAENYDAEVQVVTLLVDQNSIDDHYHPVGGRYPVEFEGRKEFVEEIGICVHSCKWHDHNIINAEEVCATLEGLDYVN