Scaffold Ga0208005_1002000

Overview

Basic Information

• Taxon OID: 3300025848
• Scaffold ID: Ga0208005_1002000
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6565
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033771	Metagenome	176	N
F045056	Metagenome	153	N
F063808	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208005_100200010	F033771	N/A	VDAERGDVSENTKAAIMSLLNKITVDQFQRIVSIEANSIYTTSDKKIGVVAVIDNMPIEQVKKMTIAEVNKRYAEINAASKSLSTLAAKQYAKVGGKWYRFEWFIDEISAGQLVELYSYDMTSEQGVIDNLHLILATLSRECRVWKWWPKAYDGKGHKQRAEAMLQMNMGDVWGYTAFFLQLSEPLLTIMRKSLTEQERKMTTAKG
Ga0208005_100200012	F045056	N/A	MKFTTEIEGDILGVGTDVTKEFSLSQSPDVNAALIRWMQDVIKLTVEGIERVDAKATLNLRQSVGFAELPVEQKVAQVAMEMASYWKFVEYGVNGVRVNRGAPFSFRSINPSEKDVADIRKWAIDKGLGIPADEIDAAAYNIAKSIKRRGIKGRPFLNPVLSDAKLDELVSSIAEVVGKEISITMNV
Ga0208005_10020002	F063808	N/A	MTHQPDITIEQDARALDWQDRGHLLTNLSNVLDSLEESTAPNAMHAKVAVVEKIIDIVTNMEA