Scaffold Ga0209182_10174948

Overview

Basic Information

• Taxon OID: 3300025843
• Scaffold ID: Ga0209182_10174948
• Source Dataset Name: Lake sediment microbial communities from Lake Baikal, Russia to study Microbial Dark Matter (Phase II) - Lake Baikal sediment 0-5 cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 602
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Russia: Lake Baikal
• Coordinates
  • Lat. (^o): 53.7598
  • Long. (^o): 107.9791
  • Depth (m): 0 to .05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015354	Metagenome / Metatranscriptome	255	Y
F035672	Metagenome / Metatranscriptome	171	Y
F067530	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209182_101749481	F015354	GGAG	MNSNFSSLIRHGLTAAGGFLVAKGLASADQVGELAGAVVTLIGLVLSMLKNK
Ga0209182_101749482	F035672	N/A	MLTDTVRDLGIGVGGPAGGLIIANFVPDPLLAHISITLGSLAALSVIIKNVLDIWSNRNK
Ga0209182_101749483	F067530	N/A	MQVLTLTLDPATANALITALEVARRQGDFAVARTAVSVISELIRQDEEFKKLNPPVQIQTAE