Scaffold Ga0209182_10020930

Overview

Basic Information

• Taxon OID: 3300025843
• Scaffold ID: Ga0209182_10020930
• Source Dataset Name: Lake sediment microbial communities from Lake Baikal, Russia to study Microbial Dark Matter (Phase II) - Lake Baikal sediment 0-5 cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1954
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Russia: Lake Baikal
• Coordinates
  • Lat. (^o): 53.7598
  • Long. (^o): 107.9791
  • Depth (m): 0 to .05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023096	Metagenome / Metatranscriptome	211	N
F025727	Metagenome / Metatranscriptome	200	N
F045750	Metagenome / Metatranscriptome	152	N
F064717	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209182_100209302	F064717	AGGAG	MEKMLGPVTHFKDTDPKIPRRWEAIPDDIREAVLKEHKTFTCRELGKKYGISSSCAWNIRNKKNKQTNKK
Ga0209182_100209303	F045750	N/A	METVMSRIGRMLGLRMHNTNRTVCPVPQSTQTVSSSPDTITIDKAVSKKTRKLLKQKYMKINDSINKINELRLKGYTYQAIGDEMKISKQRVSQIIGASKKRDDNNNKWTSGLSTRNVLLMEKLGVQDKSTAILLIESREIVPFKWPNFGRKSYHDLCAWLGTQPIDPGLGRHCPHCGKTSKQ
Ga0209182_100209304	F025727	GGA	MSNHSFPLVESIKVVHLSGERTIRVRRDRTEENLKTNYGDGDIHLTCVSQAHDPIEMIKTLARLESVRSVELVDSKGNGIVIHKQK
Ga0209182_100209305	F023096	N/A	MKPSSTHDIVNALNIISAELETTDGTSNALIAEAAQRLLELVQLTSDLTAHIISNPVHHGRCNAKTKGTYCNCILARLSTP