Scaffold Ga0208917_1184507

Overview

Basic Information

• Taxon OID: 3300025840
• Scaffold ID: Ga0208917_1184507
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 704
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049595	Metagenome / Metatranscriptome	146	N
F064194	Metagenome / Metatranscriptome	129	N
F084181	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208917_11845072	F064194	AGG	MKTYLVEINAVVWKQIEVRAESVEAADTLAHELFNLTADGCPERYDQQTQMIWEDDSTNIRNWKEVM
Ga0208917_11845073	F084181	GGTGG	MKTKTYDVQIEAIVTKTIRVNAIDKDAAYELAHEIFTVTRDDHEERYEQHTLNIVEVSDEDRNEKPAWERGDK
Ga0208917_11845074	F049595	N/A	VSDYRFENHGSIFLCQPLNGAAKDNLDQACEGTDDFHIRWGDALVIDHRFANDIAQQLIEEGWVIE