Scaffold Ga0208872_1018207

Overview

Basic Information

• Taxon OID: 3300025838
• Scaffold ID: Ga0208872_1018207
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3279
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus basilensis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041558	Metagenome	159	N
F042700	Metagenome	157	N
F071899	Metagenome	121	N
F104335	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208872_10182072	F104335	GAGG	MAFWEVTGTVVTEDNNAVTFRTFVPAEELVDTVNEGLDAIFEIENPEVYDEPETMTNGCFAMAQGLAAIEPPPAVNVHVEVHV
Ga0208872_10182073	F071899	GAGG	MQARVKLTPHIIARLIVGKPVTVNLPAGTSSLSLVTEGKFHEFLRAFHAPEEFEPETSHTEVIGLFDLIFGSH
Ga0208872_10182077	F042700	N/A	MDAQKEAYKLLKEHGEQIRHNKHEAWRVNGHLITITKTKTDDRGWLNKLCEIRRCLKTPAEEVYRQARCNGKNRFSDAPAAQHSVSCAGPAATR
Ga0208872_10182079	F041558	AGGAG	MPPRKNQPKKATAKAKPAPVKPTAKTESVGAPAVVAPQALKFTAGDLVRKALQLRQQHTLNAPAATGEALGSSKGPKPTIVEFKVTLSDGTVLHATGKHADVMVRFSNECQEICQTQGLSAYNGPPLTHYTAEEWAAMNA