Scaffold Ga0208872

Basic Information
Taxon OID	3300025838 Open in IMG/M
Scaffold ID	Ga0208872_1000999 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025838 Open in IMG/M

Scaffold ID

Ga0208872_1000999 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18481
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (26.09%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

18481

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (26.09%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Crystal Bog, Wisconsin, USA

Coordinates

Lat. (^o)

46.0072

Long. (^o)

-89.6063

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F030662	Metagenome	184	Y
F048735	Metagenome	147	N
F055388	Metagenome / Metatranscriptome	138	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0208872_10009991	F048735	N/A	MEYNGLVLDAPKDTTYGIPYLETVPQFVRELSCYALTRGEFGRIQRIKRGIRIEDTDLKNPAQHMVNCFNLIYGNDVLLHSQGIPNNYALDIIDLFCNENDWGIAGCASSGKTFSVAACIVMDWISAPTVTSTYVASTSLDASEDRLWGKVCTLYRTAMRNIQAQYKTATIGNLVEYRRMIVFESIDTRDTERDYTNAIKAVAFPKGGEGQKAVDNMRGRKNERVRVFLDELAEMDLYCLNVRSNFTAGNDDVLFGGMANPSNTANNPHTELCEPDDPMGWESVNRYTKRWKTRTGVALHLSGEESPNLQAPDAEIPPFKNFLTYKKMEATLKICYGNKNALEYWRNVYGWWPDNSVELTILSKAFIAGCDLNFEPVWSGRTRVVCGFDPAFTAGGDRCAASFCRLGQNDTGRNVGFYLGTREYESSVGDVFEESIAMQLVKDCIEFGVHPRDFGLDISGDGGKMMRAIIIEWSKFHPEAMFVFPISSMGMPTERKISNLDKRTCKEAYDRLVTEYWFAVHTAFSTRSLVGIDVDAHSKVVNELCSRLYYHKGRKVAVEKKLDMKHRLKKSPDLADSLTYAVQMLRRAGLEFAFEEETVSLDIQEISDWENRLIHSKGTTQEKIEDDEWGYGGRGTDEDGF
Ga0208872_10009992	F030662	GAG	MRLKDKNGPIPSGLWYEYSDDKGTKYRVNGMEMTYGRQFSNKVASDMKNNNVEVPDNLDYLIEQQICGRIPGQYCWQEAGDKVANVIHTFANLGDRVAATLGVQTNLEQAARGCTACQKRRQAMNQTLG
Ga0208872_10009999	F055388	N/A	MAQNGVTFSSCQDVDTLFREARVYYNPFFIKKMAINSIYYGRLETETWPLNTLPTQKAFRFGRGWYNPDQPWEQVQSGRCIQNADDVQFETIAHPGTESYSFSLFTKAMRTDWYQLTDFMYRLFPQEEMDHIMATNVNITKNVHEEFARSNWIGGAGHKWVPVSNGQSLVSCVTPDDQMFIVQPFEGTNEGSYNMGYVYVKMAASQLNNIGLLSLDTLDDILINLQREDDAYRLDVSEAAGRPLLEIIVPDSRVLRQLWQYAKQSGGWWESVSDFDDKQLQYSLGIDRVIGNYAFCNDINGVRFNVDWTYNASLPTFNVNDPTTWPRLVRVLPYYPVTTELGCKYIQNPAYNYADFGITNPWVNKAMIKWISPSQSGIGEAQGMTQNYAGDWEWKNPDWECNIKRDQGFFWNQFRMGMQFQDPTLMHSILHRLNNAQLVIPAACTLSPNYAPQYTPDCYACNSTVSQPI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208872_1000999

Overview

Ecosystem & Geography

Associated Families

Sequences