NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210039_1181022

Scaffold Ga0210039_1181022


Overview

Basic Information
Taxon OID3300025835 Open in IMG/M
Scaffold IDGa0210039_1181022 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG17_big_fil_post_rev_8/21/14_2.50 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)819
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003801Metagenome / Metatranscriptome467Y
F012552Metagenome / Metatranscriptome279Y

Sequences

Protein IDFamilyRBSSequence
Ga0210039_11810221F003801N/AAKIKQIITMTNKIREDIYEFDRQIDIAPIPKTDTEQEKKIKKTDDFQEGIRKRWEEVWLLKEEIRTTTDIIHELSQIRRKYIGVAKEEQMSWADIRREILDGLKKSFCQ
Ga0210039_11810223F012552N/AMKNTKAGVGAVPAQVEVIRKKTFEKIFEKMRCVKVMEIYIQKRENDFFWE

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