Scaffold Ga0210039_1071160

Overview

Basic Information

• Taxon OID: 3300025835
• Scaffold ID: Ga0210039_1071160
• Source Dataset Name: Groundwater microbial communities from aquifer - Crystal Geyser CG17_big_fil_post_rev_8/21/14_2.50 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1547
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Desantisbacteria → Candidatus Desantisbacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_40_23 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location

• Location Name: USA: Utah: Grand County
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002857	Metagenome / Metatranscriptome	525	Y
F017787	Metagenome	238	Y
F068436	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210039_10711602	F017787	N/A	MEKIIREGEHILGKEKYTLGVRAKFDVNFEYFEILKHSNFNDECVYLSRKFFFLKNIITDDEKKEIEKFENEILDKFYYK
Ga0210039_10711603	F068436	N/A	MENKKESVENAQEKGIVNEILGEIRKKSREHEKRMNLIEAILN
Ga0210039_10711604	F002857	N/A	MENKKRIWGTTQTDEAYDEMIRMEKEKQNSVFKNDEKNDKKEMEASMKFLSDKNFIERISLRDGMKRKFKLVKDEVTEIIGFDGNTKQGITYIVTENEKQKSFFTTSMKCISMLSKFQKDDVFEIELKTKKVGDTLISYHVVKKI