Scaffold Ga0210039_1050140

Overview

Basic Information

• Taxon OID: 3300025835
• Scaffold ID: Ga0210039_1050140
• Source Dataset Name: Groundwater microbial communities from aquifer - Crystal Geyser CG17_big_fil_post_rev_8/21/14_2.50 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1952
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location

• Location Name: USA: Utah: Grand County
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042165	Metagenome / Metatranscriptome	158	N
F057888	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210039_10501401	F042165	N/A	MQNTYSKDGLVLDISDQKLRETGRDITRDKSRHMNHGMCMNGTDIIQTKEGTSALSFD
Ga0210039_10501404	F057888	N/A	PSVFADAMLKVEDSGYVPYCFLCSPAQANAMRKHSQFTDASQLGTTDVIKTGIIQNFLGVPFIVSTNCPQYNTNDTDVNETNIHWGTAGNTGILISKRKSGQKCSGGIFWKQKGKIDYIQNVEEMLHKFTLIMAFKCTHLQPTSICLVKTSKV