Scaffold Ga0209307_1016555

Overview

Basic Information

• Taxon OID: 3300025832
• Scaffold ID: Ga0209307_1016555
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110530 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3310
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057323	Metagenome	136	N
F071009	Metagenome	122	N
F090089	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209307_10165552	F071009	N/A	MTTDPENLPSLDDASLDALIQHYLSLKQRLTDNVRVRERLVELQDEQLKRQIEALGNYEPIGDDIKNQLNQ
Ga0209307_10165553	F090089	AGGAG	MSVTIYLTDHNGNQIAFFYRVDNERYSTCPNILWSCRQYPQFQGSASSKGDFIEQAKQTLKEIKKLSVPVRKVCKDCDISLQGPENESNVCDECNPTTEDL
Ga0209307_10165554	F057323	N/A	MKILVLTIRFHGEEDDIYVFDNREVNVLPTIKEWLKENDEHLDLPAYVTDSESFWKWYRNEDDIDHIFIGTHYKELLSE