Scaffold Ga0209307_1011309

Overview

Basic Information

• Taxon OID: 3300025832
• Scaffold ID: Ga0209307_1011309
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110530 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4299
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015461	Metagenome / Metatranscriptome	254	Y
F033439	Metagenome / Metatranscriptome	177	Y
F061764	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209307_10113091	F033439	GGAG	MIPALPYSKLVEKHILECIQGGIGIRQMIASMQHLQDAPKSLSTMYKIYGSFIEMERAKINGAVG
Ga0209307_10113092	F061764	GGCGG	MMEWRVYILTGGKRFCYHATRSKGEALDKLAVLERRHDSRYQFEIEPVTF
Ga0209307_10113099	F015461	GGAG	MENILAELKAIMQDAQEASARAGEYKNDIDRGINVNHNPEYDTSVTKQDKINSLFEYLIDAKDDMDRVKDSLKDIHDKLDDLLELVEYENIAKGIR