Scaffold Ga0209832_1147205

Overview

Basic Information

• Taxon OID: 3300025830
• Scaffold ID: Ga0209832_1147205
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 697
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010277	Metagenome	306	Y
F024420	Metagenome	206	N
F050005	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209832_11472051	F050005	N/A	AMYSKTNYPLYHEFKLMKFGNVLLNTNVDDILDQEIEETTVIINQLKDINQFLEV
Ga0209832_11472052	F024420	GGAGG	MTIYEELRKIIDRNSCWQQEGRKFELLWNLLLSSDKRSFSEYFEEEHSIKLYDAMTFKEILILCRDYNVGGRFKXVQNLKSVIDGLFG
Ga0209832_11472054	F010277	AGGAG	MSRLKDKLLEVELFVGEKLQDLTNDQVIKEVRKHFGSQMFVDHAEELLHEFQ