NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210031_1079528

Scaffold Ga0210031_1079528


Overview

Basic Information
Taxon OID3300025827 Open in IMG/M
Scaffold IDGa0210031_1079528 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG03_land_8/20/14_0.80 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1088
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001911Metagenome / Metatranscriptome618Y
F019952Metagenome / Metatranscriptome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0210031_10795281F019952N/AIHPDGHMILLEKPRVLRRIFYSIMVPTDLTMGHRSHISFDDPAFRSYYVFDGQVQQLEAKGEGICQEDIWAQNVSSEDLVFVMTEVLV
Ga0210031_10795282F001911N/AMNSEIMFSKSDLKTLILKNILIFQQHKRGWIISINPHYITKNVECSWCGAKFSEMVYFRQNSITCPGCGFRMHNSTTAERVDNHSTSEKAVINVQSGHVISDNSGNIIVTDIVLAPTAMERTIQIANQEVIPFKTSKADKLNALSTLKRIENKKKEANVLILQDNILANFSPICINFLKKYFFIQNHTFFSAMKYMNLRLSEISNDPQFIANASLKGNTLTEVKNACELLYENAIIRSVTIVADD

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