NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209714_1096434

Scaffold Ga0209714_1096434


Overview

Basic Information
Taxon OID3300025822 Open in IMG/M
Scaffold IDGa0209714_1096434 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110414 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)830
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004956Metagenome / Metatranscriptome417Y
F028655Metagenome / Metatranscriptome191N

Sequences

Protein IDFamilyRBSSequence
Ga0209714_10964341F004956N/AKETIMKMISPDGKVSIDAHPSKVESLLNKGWKEEAAPSKDKPKSSSKEKSKDEVENGNT
Ga0209714_10964343F028655N/AMSVIDKAKAHFDSLEIKEIEIPEWSDGEKVLKIYAKPLTLAEMSKLQKLAKDDDVALMAYCLIYKALDSDGEKVFDLSDKHTMMHGVDKD

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