NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209714_1063210

Scaffold Ga0209714_1063210


Overview

Basic Information
Taxon OID3300025822 Open in IMG/M
Scaffold IDGa0209714_1063210 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110414 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1143
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030557Metagenome185N
F052887Metagenome142N
F093729Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0209714_10632101F052887GGAMSKIEHEINQYLYVRSNIINILADAAIAERFIRAPNNRRCPSMYQMLETYYDKKDWGYHVEPTLKLRGTPKQMQNYDTAIDLLLMIDTDI
Ga0209714_10632102F030557AGGAGGMSKFYLTDPNIINAALTDKEFRIYHYCCSNYNVQKRSAYIRIVDIAGLFQLTKKEVEELLIKLSQIKVNDLPLISMKQEKFISFDMPSHKKFIESLGFKKYSNQGFRTLNGHFKQIQEAEQNIVRNYLYPGLDQWELLEKLESLPTEEFKKVKPEQLQYPWILKKCQR
Ga0209714_10632103F093729N/AKISQCPACGKALFLADLIFNANNQYKTKPFYTKRIYLEIATALQIPFFELYYTTEGRADNGPLESLSVRRIAPTKGELQHIDLDKWLQYLEFKVQEHIKVCQSKDYLLKRITEDNEHNKNFIRRNNYVKVLSNRS

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