Scaffold Ga0209714_1063210

Overview

Basic Information

• Taxon OID: 3300025822
• Scaffold ID: Ga0209714_1063210
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1143
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030557	Metagenome	185	N
F052887	Metagenome	142	N
F093729	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209714_10632101	F052887	GGA	MSKIEHEINQYLYVRSNIINILADAAIAERFIRAPNNRRCPSMYQMLETYYDKKDWGYHVEPTLKLRGTPKQMQNYDTAIDLLLMIDTDI
Ga0209714_10632102	F030557	AGGAGG	MSKFYLTDPNIINAALTDKEFRIYHYCCSNYNVQKRSAYIRIVDIAGLFQLTKKEVEELLIKLSQIKVNDLPLISMKQEKFISFDMPSHKKFIESLGFKKYSNQGFRTLNGHFKQIQEAEQNIVRNYLYPGLDQWELLEKLESLPTEEFKKVKPEQLQYPWILKKCQR
Ga0209714_10632103	F093729	N/A	KISQCPACGKALFLADLIFNANNQYKTKPFYTKRIYLEIATALQIPFFELYYTTEGRADNGPLESLSVRRIAPTKGELQHIDLDKWLQYLEFKVQEHIKVCQSKDYLLKRITEDNEHNKNFIRRNNYVKVLSNRS