Scaffold Ga0208542_1007101

Overview

Basic Information

• Taxon OID: 3300025818
• Scaffold ID: Ga0208542_1007101
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4064
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029593	Metagenome	188	N
F077802	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208542_100710114	F029593	GGAG	MVNVSRIDNRLQRVADFGKSQFVASDLATMPPSNKNRSEVKGARSKKKETPLHALYRKCQAIWDFSHFILFPFIGDFSSIKSGIPFKRMNKSGKPLVALFSIFWKKELLGSAFFISFESVFSVDIXYGKN
Ga0208542_10071016	F077802	AGGAG	MTTELYPTDYVIIDSDTKKPIEGYEHIYHYTSVIDHFNEILTDKNEGWEYVSMSELSDEDQKKYKQTIKEMEEFRNECVXELWRFTXS