NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209193_1042749

Scaffold Ga0209193_1042749


Overview

Basic Information
Taxon OID3300025816 Open in IMG/M
Scaffold IDGa0209193_1042749 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1293
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F086161Metagenome / Metatranscriptome111N
F094106Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209193_10427492F086161GGAGMDNHKTFVLNTEETFNKLQEASEKKAETLFRYRKLEKSEKIILAKLKNELRLNHDKISQTELTDEAYRQTKYKEWLIAYTQAEKDFTLAKDYYNNLIALKDMRITEESSARYLINKK
Ga0209193_10427493F094106GGAGMTKLGRKIRIKFIYTDELLRKILDNPTNEHLYDMKDKFAKIETIKFNPFDKPEFEKELLTFSNTFTFFSYKDFAERLKEYEKFTILQYRISDNNDDSFKSKQFGLCWACDITGLNMDKCLERYIDLEKSKYEIKNTKPGSKYNVKRVFYWGKEI

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