NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209193_1040529

Scaffold Ga0209193_1040529


Overview

Basic Information
Taxon OID3300025816 Open in IMG/M
Scaffold IDGa0209193_1040529 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1339
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006867Metagenome / Metatranscriptome363Y
F059941Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0209193_10405291F006867N/ADMLYGKELAQSIQKRCKIQPGMLVRSTAGTEVSKIALVVRLSPACEFDRDYEGSEDHIFYICEPCDGTPAFSDYVTNMEQIS
Ga0209193_10405293F059941GAGGVKLGTLVQFKAYGTVLDTGYISKYDEDPKMIWVNYSKTGPQRVHVDSTMMEVVSEAR

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