Scaffold Ga0209193_1017908

Overview

Basic Information

• Taxon OID: 3300025816
• Scaffold ID: Ga0209193_1017908
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2289
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054888	Metagenome / Metatranscriptome	139	N
F069473	Metagenome / Metatranscriptome	124	N
F087135	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209193_10179081	F054888	AGGAG	MDFFEENSGEGNGSNSYLKFLAKEKAWYIGENVYDMEYILLDPDTIQTGLGRYSGGYEFEFSDIPFSKVENKEGWKKAFSVWAFTSDKQVVQWERAAWGELQGFKSMCEKFWMQKAANEGQLPCFRYLGSRGVKFDSGFSSEVPEFEFVAWKPRPAEFVIPAWANDEDVPAPVAESP
Ga0209193_10179084	F087135	AGGAG	MTQYTDLIKLQALKNDVYEWAKRVKSHYMQTRYGDGFYEITYNDDSREVMYNDGTVKTTDSPHNFEQLVRLYEQDHGEQW
Ga0209193_10179085	F069473	N/A	MESLDMKTAIKNKRNKLTERTTTQAIWVDSEIHQLLKEHQVMSRSSRSLGELAAHYIKLGICDARSNDK