Scaffold Ga0209193_1004379

Overview

Basic Information

• Taxon OID: 3300025816
• Scaffold ID: Ga0209193_1004379
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5857
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F021674	Metagenome	218	Y
F022555	Metagenome	214	Y
F069451	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209193_10043792	F069451	GGAGG	MKPGDLVRIRKTAINNYSTLWFINLADRKAPLLLMKKINKQHWQVMRPDGTDCFISENKLTTRLW
Ga0209193_10043793	F021674	AGG	MERETYNTRLKTNPEDIPVGSLLRVKKHCRKNITIRHNGEYGILALSANGKYITHDVLFPNGTRCIYMPLNWEVVSYAG
Ga0209193_10043794	F006383	GGAGG	MRDKMWEVQQPGTLLRARSSHQYGKLALVLQEAYAGPTPSNGYPPHRYVKMQWLATGERFEEMLTNAHNCFDIVGSCDTLGPEES
Ga0209193_10043795	F022555	AGGAG	MAITPKFKPGQLVRYGNPTHDLVGLVKSTQFARRRGDPVFVLVQWCGKYRNNEEYIPQAELKLVEGS