Scaffold Ga0209193_1004295

Overview

Basic Information

• Taxon OID: 3300025816
• Scaffold ID: Ga0209193_1004295
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5930
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (95.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015102	Metagenome / Metatranscriptome	257	Y
F032681	Metagenome	179	Y
F053632	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209193_100429517	F032681	AGG	MEGTRLMGKGFDVKNNMAVKALAKRLNMEVGMSTSMAVEEALTYLTMSFHKRNVDSIKAAELLRWWLSDFQDTEVEYFATRLDLAEEVRNR
Ga0209193_10042952	F015102	GGA	MHMSKENKNEQDKNTPFDDVTHWVGNLPNTDTDSTKRTNKRNTRRKSKSNFLSKKLGLEK
Ga0209193_10042956	F053632	GAGG	MKLYKNSEGVWAGTQADARKMCGKDYSTVDVPTDKPSLLKFLNFNQVGSYTSNDKTETHYEVYVPSEHRDNDLDSKALSYFNWGYDKMCSGQYDEGKELIRKALLYKKTHDIHEGES