Scaffold Ga0210004_1016281

Overview

Basic Information

• Taxon OID: 3300025811
• Scaffold ID: Ga0210004_1016281
• Source Dataset Name: Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/8/14 3 um filter (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3181
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016112	Metagenome / Metatranscriptome	249	N
F057888	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210004_10162812	F016112	GAGG	MWGSIEKVRNICGITKEQINDVVIHDILEQTDRKVRNKIYIFRRLTMQMNKIDANKIMFDCNKIGDGNMDTSINSTDISIYRKNNGVYELFPIQKLDILSNEITFQTDIGENYDMIVEYFEDNFHFSIDTLSDASSLFAAAMCMRSLPLTETENNAKEYERKAKEIITRSSASFI
Ga0210004_10162816	F057888	N/A	EDSGYVPYCFLCSPAQANAMRKHSQFTDASQLGTTDVIKTGIIQNFLGVPFIVSTNCPQYNTNSADINETGVNWGTAGNTGILISKRKSGQKCSGGIFWKQKGKIDYIQNVEEMLHKFTLIMAFKCTLLQPTSICLVKTSKV