NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209199_1115885

Scaffold Ga0209199_1115885


Overview

Basic Information
Taxon OID3300025809 Open in IMG/M
Scaffold IDGa0209199_1115885 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110523 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1068
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079926Metagenome115N
F090391Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209199_11158852F090391AGGAGMKDTVKIKREALEKLFDFVRKDLENSHLETIDNEDLTYIINVTDALMAAKYSLELYKNENHVFIEIEQLQFLTGQTQDSFDFIAPDTDWNCLSDMLATNLLANAILEARQAIGIETETKEEQSK
Ga0209199_11158853F079926AGGAGMTTKVVAQPWYDMAVKDKFSIQVDELTFHILDELGKPIVNDDLTPMKFRSLRELDFITDYIELDDLEVI

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