Scaffold Ga0209199_1001259

Overview

Basic Information

• Taxon OID: 3300025809
• Scaffold ID: Ga0209199_1001259
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31135
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (25.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016669	Metagenome / Metatranscriptome	245	Y
F021308	Metagenome / Metatranscriptome	219	Y
F028483	Metagenome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209199_100125915	F028483	N/A	MTKNTSYKVQVDVDTDAVRNQYNIEEGAYVTTESGVWTVYKGQWVKLYPQAGVGTGIGWTRYDDDQYTSASKLNLADGVEITLPNNAANIYRSYSGIDYYNGITKRVLADNLNDVYVLTIAFKCSSANANQTYMRLQLDAENGTPYERVGVDISFPKGNDVAHEFHQVFQYYADQNFVDNGSFVKVTPIGGTAKIWDIIYFIQKTQSYA
Ga0209199_10012592	F016669	GGA	MNVLDNKISFISGFVFTALSTVTIMGVAQAAIVGLVGGFFGLLGKELFYYLKGKINGRKS
Ga0209199_100125958	F021308	GAG	MRKLIDKIVFKFIEFKIWLHQKKEGSTWDKVQFGLFWMLIMILTSMLIGKIL